Where to Fish for Musky in New York State
Catching a muskellunge, or muskie, is no small feat—experienced anglers will tell you that success is never guaranteed. Muskies are elusive, challenging, and notoriously difficult to land. However, New York State offers some of the best opportunities for anglers looking to catch their first muskie, particularly during the fall season when the fish are more active. Fall brings with it shorter daylight hours and cooler water temperatures, which prompt muskies to feed aggressively, offering anglers a better chance of success.
Whether you’re an experienced fisherman or new to muskie fishing, New York’s waters are some of the top destinations to hook these legendary fish. Let’s explore the prime spots where you can try your luck at landing a muskie this season.

The Muskellunge Fishing “Big Three” in New York
When it comes to hunting muskellunge, New York State’s “Big Three” waters—the St. Lawrence River, the Niagara River, and Chautauqua Lake—stand out as the premier destinations. These are large, well-stocked bodies of water that consistently produce some of the biggest muskies caught anywhere in the world.
St. Lawrence River
The St. Lawrence River is a muskie angler’s paradise, offering diverse fishing opportunities and beautiful scenery. Anglers can expect to use deep-water trolling as the primary method, particularly in traditional fish-producing areas along the river from Cape Vincent to Massena. Depending on the boat, setups range from flat-lining diving plugs from a 14-foot boat to using multi-rod arrangements on downriggers and planer boards aboard larger crafts with heated cabins. This river is well-known for producing large muskies, and a day on the water here is often a day spent with great expectations.
Niagara River
The Niagara River, which forms part of the border between the United States and Canada, is another top location for catching muskies. Fishing here involves trolling diving plugs across the Buffalo Harbor, Upper River, and Lower River. The Upper Niagara River is especially popular with casters, while the Lower River is seeing increasing success for anglers drifting live suckers, particularly in the fall months when muskellunge become more active. Whether you prefer casting or trolling, the Niagara River provides a variety of muskie-fishing techniques to try your hand at.
Chautauqua Lake
Chautauqua Lake, located in western New York, is another premier muskie destination. With 13,100 acres of water, this lake offers both trolling and casting opportunities. Its northern basin is deep, while the southern basin is shallow, giving anglers the option to choose their preferred fishing methods based on the area they’re targeting. Unlike the St. Lawrence and Niagara Rivers, which rely on natural muskellunge reproduction, Chautauqua Lake depends on stocking from the New York Department of Environmental Conservation (DEC) to maintain a healthy muskie population. While Chautauqua is known for producing more muskies overall rather than consistently huge fish, it remains a highly popular destination due to its abundance and the potential for sizable catches.
Smaller Lakes and Rivers for Muskie Fishing in New York
Not everyone wants to fish the “Big Three,” and for anglers looking for smaller, more accessible waters, New York offers several other excellent options. Many of these smaller lakes and rivers are stocked with muskellunge or tiger muskellunge, providing a chance for anglers to try for their first big catch without the vastness of the larger waters. Some of the best small water destinations for muskie fishing include:
Cassadaga Lakes
Located in Chautauqua County, Cassadaga Lakes cover a combined total of 210 acres, making them ideal for small boaters and casters. These lakes are known for their weed beds, where muskies like to lurk. The DEC stocked 1,070 muskellunge fingerlings here in 2009, and the lakes remain a great choice for anglers looking to land their first muskie.
Great Chazy River
The Great Chazy River, a tributary of Lake Champlain in Clinton County, is another excellent choice for muskie fishing. This river sees both casting and trolling action, and the lower stretches are particularly productive. The DEC stocked 1,400 muskellunge fingerlings here in 2009. This river offers a quieter, more intimate experience compared to the larger waters of the St. Lawrence or Niagara Rivers.
Waneta Lake
Waneta Lake, located in Schuyler County in the Finger Lakes Region, covers 780 acres and is a prime spot for both casting and trolling for muskies. Anglers focus on the lake’s points and deep weed edges. Over 4,000 muskellunge fingerlings were stocked here in 2009, and the lake’s productive waters make it a favorite among local anglers.
Tiger Muskellunge: A Unique Challenge
In addition to the traditional muskellunge, New York State is also home to the tiger muskie, a hybrid cross between a northern pike and a muskellunge. These sterile fish are stocked annually in over 50 waters across the state, giving anglers a chance to catch these unique creatures. Tiger muskies are often stocked in smaller lakes and rivers that are accessible to small boaters, and many anglers end up catching them incidentally while targeting other species like bass.
Tiger muskies are known for their hard-fighting nature and impressive size, and they can offer a thrilling challenge for those looking for a muskie experience a little different from the norm. If you’re interested in catching a tiger muskie, there are plenty of accessible waters stocked by the DEC where you can try your luck.
The Importance of Catch-and-Release
Catching a muskie is an unforgettable experience, but for many anglers, the true joy comes from watching the fish swim away after a successful release. This is why modern muskie anglers adhere to the practice of CPR—Catch, Photograph, Release. Not only does this ethical practice ensure the fish’s survival, but it also helps preserve the muskie population for future generations of anglers. It’s important to handle muskies with care and respect, particularly when fishing in waters with large, trophy-size fish like those found in the Big Three rivers and lakes.
Where to Try Catching Muskellunge in New York State
New York State offers a wide range of opportunities for anglers seeking to catch muskellunge, including both traditional muskies and tiger muskies, which are stocked in various waters across the state. Whether you’re looking to fish in a remote pond, a large river, or one of the state’s many lakes, there are several prime locations known for their muskie populations. Here’s an extensive list of waters where you can try your hand at landing these elusive fish, including those stocked with tiger muskellunge in the past year.
Albany County
- Mohawk River: A well-known river that runs across Albany County, providing anglers with a range of fishing opportunities for muskellunge, particularly in its slower-moving sections.
Cattaraugus County
- Lime Lake: A serene, smaller lake popular among local anglers for muskie fishing. With ample shoreline structure and weed beds, Lime Lake offers a perfect environment for muskellunge.
Cayuga County
- Duck Lake: A quiet, picturesque lake ideal for muskie fishing, where anglers can cast and troll for trophy-sized fish.
- Lake Como: A smaller lake within Cayuga County, this is an excellent choice for targeting muskies in a more controlled, less crowded environment.
- Seneca River: This waterway is known for its abundant muskie population, and anglers can find productive spots throughout the river, especially where the water slows and deepens.
Chenango County
- Chenango Lake: This lake offers great muskie fishing potential with its clear, deep waters. It’s an excellent spot for those looking to target larger muskellunge.
- Long Pond: A smaller body of water that offers a quieter, less pressured environment for muskie fishing.
Columbia County
- Kinderhook Lake: A scenic lake where muskies are frequently found, making it a great spot for anglers interested in targeting these elusive fish.
Essex County
- Lincoln Pond: A beautiful and remote pond with plenty of opportunities for muskie anglers, offering a more private fishing experience.
Green County
- North-South Lake: A popular destination for anglers in Green County, North-South Lake provides both trolling and casting opportunities, with a healthy population of muskellunge.
Hamilton County
- Lake Durant: A deep, cold-water lake where muskellunge thrive. It’s a bit off the beaten path, making it an ideal location for those seeking less crowded fishing spots.
Herkimer County
- First Lake: Known for its calm, shallow waters, First Lake is an excellent place to try your luck at landing a muskie.
- Mohawk River: Another section of the Mohawk River runs through Herkimer County, offering anglers diverse habitats for muskellunge fishing.
- Moshier Reservoir: A secluded, peaceful reservoir that hosts a variety of fish, including muskellunge, making it a must-visit for muskie enthusiasts.
- North Lake: A smaller, quiet lake in Herkimer County where muskies are often found in its deeper sections.
- State Barge Canal: This stretch of the canal provides access to both muskie fishing and the opportunity to enjoy the area’s natural beauty.
Jefferson County
- Grass Lake: A tranquil lake that offers a peaceful fishing experience and the chance to catch some trophy muskies.
- Hyde Lake: A quiet fishing spot with plenty of shoreline for anglers to explore, ideal for targeting muskellunge.
- Moon Lake: Known for its large muskie population, Moon Lake offers great opportunities for both casting and trolling.
- Payne Lake: Another beautiful lake in Jefferson County where muskellunge fishing is popular and rewarding.
Lewis County
- Soft Maple Reservoir: A serene, smaller lake with plenty of weed beds and underwater structures where muskies can be found.
- Whetstone Marsh Pond: A unique fishing destination in Lewis County that offers a mix of shallow and deep waters, making it ideal for muskie hunting.
Livingston County
- Conesus Lake: Known for its large, trophy-sized muskies, Conesus Lake offers both trolling and casting opportunities, and it’s one of the best muskie lakes in the area.
Madison County
- Lake Moraine: This smaller lake is a hidden gem for muskie anglers, offering both scenic views and excellent fishing conditions.
- Lower Lelands Pond: A quieter spot for those seeking to catch muskellunge in a peaceful environment.
Oneida County
- Kayuta Lake: This deep, clear lake offers excellent fishing opportunities for muskellunge, with plenty of structure to target.
- Mohawk River: The Mohawk River runs through Oneida County, offering ample opportunities for muskie fishing, especially in its deeper stretches.
- State Barge Canal: Another access point for muskie fishing in Oneida County, this section of the canal provides productive fishing grounds for anglers.
Onondaga County
- Jamesville Reservoir: Known for its excellent muskie population, the Jamesville Reservoir is a top location for anglers targeting these big fish.
- Otisco Lake: A popular lake for muskie fishing, Otisco Lake offers a variety of spots to cast or troll for muskellunge.
- Seneca River: The Seneca River offers good muskie fishing, particularly in areas with slow-moving water and plenty of cover.
Otsego County
- Canadarago Lake: A great spot for muskie fishing, Canadarago Lake is known for its deep waters and abundant muskie population.
Putnam County
- Middle Branch Reservoir: A smaller reservoir in Putnam County, it’s a good choice for muskie fishing, with relatively less pressure from other anglers.
Schenectady County
- Mohawk River: A consistent producer of muskellunge, the Mohawk River runs through Schenectady County and offers anglers various stretches to explore for big fish.
St. Lawrence County
- Horseshoe Lake: A peaceful lake offering great muskie fishing opportunities, especially in its deeper sections.
- Yellow Lake: Known for its large muskie population, Yellow Lake provides a scenic setting for anglers looking to land a big catch.
Tioga County
- Oakley Corners Pond: A smaller body of water in Tioga County that offers a quiet and productive fishing experience, particularly for muskie anglers.
Washington County
- Cossayuna Lake: A top spot for muskie fishing in Washington County, Cossayuna Lake is known for its clear waters and abundant fish population.
These locations, scattered across the state, offer excellent muskie fishing opportunities. Whether you prefer to fish in a small pond, a large lake, or a river, New York’s diverse waters provide an array of choices for anglers seeking their trophy fish. And with regular stockings of tiger muskellunge and traditional muskies in many of these waters, the chances of landing a big one are high. Be sure to check the regulations and stocking reports for your chosen location before heading out.
Final Thoughts: Ready, Set, Muskie!
Catching a muskie in New York State is an exciting and rewarding challenge. Whether you’re casting in the fast-moving waters of the St. Lawrence River or trolling in the tranquil spots of Chautauqua Lake, New York’s waters are home to some of the best muskie fishing in the world. For those looking to maximize their chances, hiring a knowledgeable guide can make all the difference. Remember, patience and persistence are key—muskies are called the “fish of 10,000 casts” for a reason. So, whether you’re a first-timer or a seasoned angler, there’s no better time than now to cast your line in New York’s storied waters.
Original Article written by Mike Seymour
About the Author
Captain Mike Seymour is a licensed Coast Guard and NYS guide who has guided extensively on The St. Lawrence River, Black Lake, and in western Alaska. He is past president of the NYS Outdoor Writers’ Association and is an active writer for many publications. In addition to fishing the St. Lawrence River, he is actively fishing Lake Ontario, the Adirondacks, and other waters of the state.